Here is an update on the situation.
The front windows are only going up from the individual window switches. The front windows do not go up from the master window switch, the front windows will not go up using the key in the door, the front windows do not work in the express up mode, the rear windows however do go up using the master switch express up feature.
I attempted to reset the pinch protection per the owners manual, however, I do not think the convertible pinch protection is to be reset as per the owners manual.
I am looking for my service manual at the moment to see if I can determine if there may be an additional fuse that maybe have something to do with the problem I am having.
Possibly a programming glitch, possibly a GM5 module issue?